NEWS

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CrossClustering 4.1.3 (2026-01-10)

• Relaxed attribute check in test case correct output class within tests/testthat/test-cc-crossclustering.R due to testthat::expect_equal now "comparison of these types is not implemented". All attributes are already checked in previous lines of the same test case.

CrossClustering 4.1.2 (2024-05-14)

• exported cc_test_ari, cc_test_ari_permutation, consensus_cluster, and is_zero

CrossClustering 4.1.1

• Removed .Random.seed after CRAN request.

CrossClustering 4.1.0

• linted
• switch from {magrittr} to native pipe
• switch from {assertive} to {checkmate}

CrossClustering 4.0.4

• Added .github/CONTRIBUTING.md
• Added .github/ISSUE_TEMPLATE.md file
• Added CODE_OF_CONDUCT.md file
• Added LICENCE file for GPL-3

CrossClustering 4.0.3 (2018-07-30)

• re-submission to CRAN
• fix DESCRIPTION issues

CrossClustering 4.0.2

• re-submission to CRAN
• fix DESCRIPTION issues

CrossClustering 4.0.1

• submit to CRAN
• url fixed
• spellcheck
• update .travis.yml to fix an error in the macOS-devel build: warnings_are_errors: false for that build.

CrossClustering 3.3.02

• Rversions 3.1 and 3.2 removed from Travis-CI
• Reformat DESCRIPTION file

CrossClustering 3.3.01

• Reference updated
• Removed exported function cc_test_ari() and cc_test_ari_permutation() because now included in ari()
• Adapted code and test to the new structures and conventions
• Added dependencies for package dplyr
• Changed and renamed cc_max_proportion() in consensus_cluster() as a constructor of object of class consensus_cluster
• Created reverse_table() to come back from a contingency table to the unrolled vector of elements (issue #13)
• Changes made in cc_get_clust() and cc_crossclustering() (issue #15)
• Added examples for correlation (issue #14)
• Changed and Renamed cc_ari_contingency() to ari as a constructor of objects of class ari (issue #12)
• Added package cli into the dependencies
• Update DESCRIPTION
• Add Lifecycle badge
• Add CRAN badge

CrossClustering 3.2.14

• Added OSX on Travis-CI
• Updated README
• Minor style changes
• Changed al unnecessary use of dot (.) to underscore (_)

CrossClustering 3.1.42

• Renamed which_cluster() to cc_get_cluster()
• Renamed SignificanceARI() to cc_test_ari()
• Renamed PermSignificanceARI() to cc_test_ari_permutation()
• Renamed max_proportion_function() to cc_max_proportion()
• Renamed CrossClustering() to cc_crossclustering()
• Renamed ARI_contingency() to cc_ari_contingency()

CrossClustering 3.1.35

• Added test for ARI_contingency() as requested in issue-#7

CrossClustering 3.1.34

• Added examples to main functions
• Adopted a verb-like style for the function names
• Added data/, data-raw/ and R/data.R to include example data into the package.
• Adopted snake_case for function and variable names
• Added functions: ARI_contingency(), PermSignificanceARI() and SignificanceARI().
• Added support for complete and single method to CrossClustering()
• Removed all the calls to : in favor of seq_*()
• Removed all the calls to require() or library()
• Removed all the calls to sapply()
• Substituted geneinlista() with which_cluster()
• Reshaped directory tree
• Added dependencies.R to track imported dependencies
• Added utils-pip.R to support pipe operator
• Added utils.R for utility functions
• Restyled all the code
• Added tests modulus for all the functions
• Added support for Travis, Appveyor and Codecov CI
• Added a NEWS.md file to track changes to the package.